In our facility, though I have not had to do this with a newborn, our policy is to bill a discharge (99238-99239) for postmortem examination and completion of the death certificate in line with CMS guidelines.
"Only the physician who personally performs the pronouncement of death shall bill for the face-to-face Hospital Discharge Day Management Service (CPT codes 99238 or 99239).
The date of the death pronouncement shall reflect the date of service on the calendar date it was performed even if the paperwork is delayed to a subsequent date."
If the infant was ever considered "admitted" this might be an option, or may point you in a general direction.
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