I worked for a Pediatric Clinic. This same situation came up.
There was no Judmental/Discriminatory attitude on the physician/clinics part.
The Pediatrician's position was that he had elected to not perform any type of GYN procedures. He did not keep any of the necessary supplies for GYN procedures.
We generally referred the young lady to another practice when they began their periods, at whatever age that began, because they would need routine GYN care at that stage. If a young lady became pregnant, she was referred and encouraged to remain with the GYN or find an FP, because after giving birth, she would need/require routine GYN services, and as a Pediatrician, he did not do that and as stated didn't keep the required supplies for those procedures.
Young men in a similar situation do not require additional specific services. IF they presented with what 'might/could' have been a STD, they were referred to a urologist. For the same rationale. The Pediatrician treats infant/children.
There was no Discrimination or Judgement displayed. It was 'the policy of the clinic', for the reasons stated...and was listed as such in the Clinic Compliance Manual.
Not everyone sees 'discrimination' in every action!